6VZ7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VZ7_001 | No text annotation | ||
| HL_6VZ7_002 | tRNA anticodon loop | ||
| HL_6VZ7_003 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ7_004 | No text annotation | ||
| HL_6VZ7_005 | No text annotation | ||
| HL_6VZ7_006 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ7_007 | No text annotation | ||
| HL_6VZ7_008 | No text annotation | ||
| HL_6VZ7_009 | GNRA | ||
| HL_6VZ7_010 | GNRA | ||
| HL_6VZ7_109 | No text annotation | ||
| HL_6VZ7_011 | UNCG | ||
| HL_6VZ7_012 | GNRA related | ||
| HL_6VZ7_013 | GNRA | ||
| HL_6VZ7_014 | No text annotation | ||
| HL_6VZ7_015 | UNCG | ||
| HL_6VZ7_016 | GNRA | ||
| HL_6VZ7_017 | UNCG | ||
| HL_6VZ7_018 | GNRA wlth extra near cWW | ||
| HL_6VZ7_019 | No text annotation | ||
| HL_6VZ7_020 | GNRA-like with tWH | ||
| HL_6VZ7_021 | No text annotation | ||
| HL_6VZ7_022 | GNRA | ||
| HL_6VZ7_023 | No text annotation | ||
| HL_6VZ7_024 | No text annotation | ||
| HL_6VZ7_025 | GNRA | ||
| HL_6VZ7_026 | GNRA | ||
| HL_6VZ7_027 | No text annotation | ||
| HL_6VZ7_028 | GNRA | ||
| HL_6VZ7_029 | GNRA | ||
| HL_6VZ7_030 | T-loop related | ||
| HL_6VZ7_110 | No text annotation | ||
| HL_6VZ7_031 | No text annotation | ||
| HL_6VZ7_032 | GNRA | ||
| HL_6VZ7_033 | GNRA | ||
| HL_6VZ7_034 | T-loop with 3 stacked bulged bases | ||
| HL_6VZ7_035 | No text annotation | ||
| HL_6VZ7_036 | UNCG | ||
| HL_6VZ7_037 | GNRA | ||
| HL_6VZ7_038 | No text annotation | ||
| HL_6VZ7_039 | No text annotation | ||
| HL_6VZ7_040 | No text annotation | ||
| HL_6VZ7_041 | UNCG | ||
| HL_6VZ7_042 | No text annotation | ||
| HL_6VZ7_043 | No text annotation | ||
| HL_6VZ7_044 | No text annotation | ||
| HL_6VZ7_045 | No text annotation | ||
| HL_6VZ7_046 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ7_047 | No text annotation | ||
| HL_6VZ7_048 | T-loop with unstacked turn | ||
| HL_6VZ7_049 | No text annotation | ||
| HL_6VZ7_050 | Pseudoknot geometry | ||
| HL_6VZ7_051 | GNRA | ||
| HL_6VZ7_052 | GNRA | ||
| HL_6VZ7_053 | No text annotation | ||
| HL_6VZ7_054 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ7_055 | No text annotation | ||
| HL_6VZ7_056 | GNRA | ||
| HL_6VZ7_057 | No text annotation | ||
| HL_6VZ7_058 | GNRA wlth tandem sheared | ||
| HL_6VZ7_059 | No text annotation | ||
| HL_6VZ7_060 | No text annotation | ||
| HL_6VZ7_061 | No text annotation | ||
| HL_6VZ7_111 | No text annotation | ||
| HL_6VZ7_062 | No text annotation | ||
| HL_6VZ7_063 | No text annotation | ||
| HL_6VZ7_064 | No text annotation | ||
| HL_6VZ7_065 | No text annotation | ||
| HL_6VZ7_066 | GNRA wlth tandem sheared | ||
| HL_6VZ7_067 | No text annotation | ||
| HL_6VZ7_068 | GNRA | ||
| HL_6VZ7_069 | T-loop with 2 stacked bulged bases | ||
| HL_6VZ7_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ7_071 | GNRA | ||
| HL_6VZ7_072 | No text annotation | ||
| HL_6VZ7_073 | Mini UNCG with extended bulge | ||
| HL_6VZ7_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6VZ7_075 | UNCG | ||
| HL_6VZ7_076 | Mini UNCG | ||
| HL_6VZ7_077 | No text annotation | ||
| HL_6VZ7_078 | GNRA | ||
| HL_6VZ7_079 | UNCG | ||
| HL_6VZ7_112 | No text annotation | ||
| HL_6VZ7_080 | No text annotation | ||
| HL_6VZ7_081 | No text annotation | ||
| HL_6VZ7_082 | No text annotation | ||
| HL_6VZ7_083 | GNRA related | ||
| HL_6VZ7_084 | GNRA variation | ||
| HL_6VZ7_085 | No text annotation | ||
| HL_6VZ7_086 | No text annotation | ||
| HL_6VZ7_087 | No text annotation | ||
| HL_6VZ7_088 | No text annotation | ||
| HL_6VZ7_089 | No text annotation | ||
| HL_6VZ7_090 | No text annotation | ||
| HL_6VZ7_091 | No text annotation | ||
| HL_6VZ7_092 | No text annotation | ||
| HL_6VZ7_114 | No text annotation | ||
| HL_6VZ7_093 | Pseudoknot geometry | ||
| HL_6VZ7_094 | GNRA | ||
| HL_6VZ7_095 | GNRA | ||
| HL_6VZ7_096 | No text annotation | ||
| HL_6VZ7_097 | No text annotation | ||
| HL_6VZ7_098 | GNRA variation | ||
| HL_6VZ7_099 | No text annotation | ||
| HL_6VZ7_100 | GNRA | ||
| HL_6VZ7_101 | GNRA | ||
| HL_6VZ7_102 | Ribsomal LSU H95 | ||
| HL_6VZ7_103 | No text annotation | ||
| HL_6VZ7_104 | No text annotation | ||
| HL_6VZ7_115 | UNCG variation | ||
| HL_6VZ7_105 | No text annotation | ||
| HL_6VZ7_106 | GNRA | ||
| HL_6VZ7_113 | No text annotation | ||
| HL_6VZ7_107 | No text annotation | ||
| HL_6VZ7_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VZ7_186 | No text annotation | ||
| IL_6VZ7_187 | No text annotation | ||
| IL_6VZ7_188 | No text annotation | ||
| IL_6VZ7_189 | No text annotation | ||
| IL_6VZ7_190 | No text annotation | ||
| IL_6VZ7_001 | Single bulged G | ||
| IL_6VZ7_002 | Single bulged A | ||
| IL_6VZ7_003 | No text annotation | ||
| IL_6VZ7_004 | Minor groove platform | ||
| IL_6VZ7_005 | Multiple bulged bases | ||
| IL_6VZ7_006 | Minor groove platform with extra cWW | ||
| IL_6VZ7_007 | Minor groove platform | ||
| IL_6VZ7_191 | Single bulged G | ||
| IL_6VZ7_008 | Single bulged G, near cWW | ||
| IL_6VZ7_009 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_010 | Minor groove platform related | ||
| IL_6VZ7_011 | Isolated cWH basepair | ||
| IL_6VZ7_192 | No text annotation | ||
| IL_6VZ7_012 | tWH-tWH-tHW-tHW | ||
| IL_6VZ7_013 | No text annotation | ||
| IL_6VZ7_014 | Kink-turn with non-sequential stacking | ||
| IL_6VZ7_015 | No text annotation | ||
| IL_6VZ7_016 | C-loop | ||
| IL_6VZ7_017 | Single bulged U | ||
| IL_6VZ7_018 | C-loop | ||
| IL_6VZ7_019 | Single bulged G | ||
| IL_6VZ7_020 | No text annotation | ||
| IL_6VZ7_021 | No text annotation | ||
| IL_6VZ7_022 | tSH-tHW-tWW | ||
| IL_6VZ7_023 | No text annotation | ||
| IL_6VZ7_024 | SSU/LSU pseudoknot | ||
| IL_6VZ7_025 | Kink-turn related | ||
| IL_6VZ7_026 | No text annotation | ||
| IL_6VZ7_027 | tSH-tHW-tHS | ||
| IL_6VZ7_028 | Major groove platform | ||
| IL_6VZ7_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ7_030 | No text annotation | ||
| IL_6VZ7_031 | Major groove platform; stack outside cWW | ||
| IL_6VZ7_032 | Single stack bend | ||
| IL_6VZ7_033 | Tandem non-canonical cWW pairs | ||
| IL_6VZ7_034 | No text annotation | ||
| IL_6VZ7_035 | Kink-turn | ||
| IL_6VZ7_036 | Left turn | ||
| IL_6VZ7_037 | tSH-tHW-tHS | ||
| IL_6VZ7_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6VZ7_039 | Single bulged A | ||
| IL_6VZ7_040 | Single bulged G | ||
| IL_6VZ7_041 | Minor groove platform | ||
| IL_6VZ7_042 | No text annotation | ||
| IL_6VZ7_043 | Minor groove platform | ||
| IL_6VZ7_044 | No text annotation | ||
| IL_6VZ7_045 | No text annotation | ||
| IL_6VZ7_046 | Single bulged U | ||
| IL_6VZ7_047 | Not an internal loop | ||
| IL_6VZ7_048 | Isolated cWS basepair | ||
| IL_6VZ7_049 | Minor groove platform | ||
| IL_6VZ7_050 | Single bulged A | ||
| IL_6VZ7_051 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_052 | No text annotation | ||
| IL_6VZ7_053 | Minor groove platform | ||
| IL_6VZ7_054 | No text annotation | ||
| IL_6VZ7_055 | No text annotation | ||
| IL_6VZ7_056 | 180 degree turn | ||
| IL_6VZ7_193 | No text annotation | ||
| IL_6VZ7_057 | Double sheared with non-canonical cWW | ||
| IL_6VZ7_058 | No text annotation | ||
| IL_6VZ7_059 | No text annotation | ||
| IL_6VZ7_060 | No text annotation | ||
| IL_6VZ7_061 | No text annotation | ||
| IL_6VZ7_062 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_063 | Double sheared | ||
| IL_6VZ7_064 | Triple sheared related | ||
| IL_6VZ7_065 | Single bulged A | ||
| IL_6VZ7_066 | No text annotation | ||
| IL_6VZ7_067 | Triple sheared with non-canonical cWW | ||
| IL_6VZ7_068 | Single bulged A | ||
| IL_6VZ7_069 | Minor groove platform | ||
| IL_6VZ7_070 | No text annotation | ||
| IL_6VZ7_071 | Single stack bend | ||
| IL_6VZ7_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ7_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6VZ7_074 | No text annotation | ||
| IL_6VZ7_075 | No text annotation | ||
| IL_6VZ7_076 | No text annotation | ||
| IL_6VZ7_077 | No text annotation | ||
| IL_6VZ7_078 | Double sheared | ||
| IL_6VZ7_079 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_080 | AAA cross-strand stack | ||
| IL_6VZ7_081 | No text annotation | ||
| IL_6VZ7_082 | tHW-tHW cross-strand stack | ||
| IL_6VZ7_083 | Single bulged A | ||
| IL_6VZ7_084 | Single bulged G | ||
| IL_6VZ7_085 | Triple sheared | ||
| IL_6VZ7_086 | Major groove platform | ||
| IL_6VZ7_087 | Single stack bend | ||
| IL_6VZ7_088 | Single stack bend | ||
| IL_6VZ7_089 | Multiple bulged bases | ||
| IL_6VZ7_090 | 90 degree turn | ||
| IL_6VZ7_194 | No text annotation | ||
| IL_6VZ7_091 | Stack outside cWW | ||
| IL_6VZ7_092 | Single stack bend | ||
| IL_6VZ7_195 | No text annotation | ||
| IL_6VZ7_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6VZ7_094 | Single bulged G | ||
| IL_6VZ7_095 | C-loop with bulged stacked A's | ||
| IL_6VZ7_096 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_097 | Double sheared with non-canonical cWW | ||
| IL_6VZ7_196 | No text annotation | ||
| IL_6VZ7_098 | No text annotation | ||
| IL_6VZ7_099 | Single bulged C | ||
| IL_6VZ7_100 | UAA/GAN | ||
| IL_6VZ7_101 | SSU/LSU pseudoknot | ||
| IL_6VZ7_102 | Single bulged U | ||
| IL_6VZ7_103 | Kink-turn related | ||
| IL_6VZ7_104 | No text annotation | ||
| IL_6VZ7_105 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_106 | Tandem non-canonical cWW pairs | ||
| IL_6VZ7_107 | Kink-turn | ||
| IL_6VZ7_197 | No text annotation | ||
| IL_6VZ7_108 | No text annotation | ||
| IL_6VZ7_109 | Major groove platform | ||
| IL_6VZ7_110 | Isolated cWS basepair | ||
| IL_6VZ7_111 | No text annotation | ||
| IL_6VZ7_112 | Kink-turn | ||
| IL_6VZ7_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6VZ7_114 | Major groove platform; stack outside cWW | ||
| IL_6VZ7_115 | C-loop | ||
| IL_6VZ7_116 | UAA/GAN | ||
| IL_6VZ7_117 | tSH-tHW-tHS | ||
| IL_6VZ7_118 | Single stack bend | ||
| IL_6VZ7_119 | Single stack bend | ||
| IL_6VZ7_198 | No text annotation | ||
| IL_6VZ7_120 | No text annotation | ||
| IL_6VZ7_121 | UAA/GAN | ||
| IL_6VZ7_122 | Tandem non-canonical cWW pairs | ||
| IL_6VZ7_123 | tSH-tHW | ||
| IL_6VZ7_124 | Single bulged U | ||
| IL_6VZ7_125 | No text annotation | ||
| IL_6VZ7_126 | tSH-tHW-tHS | ||
| IL_6VZ7_127 | No text annotation | ||
| IL_6VZ7_202 | 180 degree turn | ||
| IL_6VZ7_128 | Single bulged A | ||
| IL_6VZ7_129 | UAA/GAN variation | ||
| IL_6VZ7_130 | No text annotation | ||
| IL_6VZ7_131 | Isolated tWW turn | ||
| IL_6VZ7_132 | Major groove platform; stack outside cWW | ||
| IL_6VZ7_199 | No text annotation | ||
| IL_6VZ7_133 | Intercalated tWH | ||
| IL_6VZ7_134 | tSH-tSH-tHH-tHS | ||
| IL_6VZ7_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6VZ7_136 | Triple sheared | ||
| IL_6VZ7_137 | Single bulged C | ||
| IL_6VZ7_138 | Single bulged A | ||
| IL_6VZ7_139 | Kink-turn related | ||
| IL_6VZ7_140 | Minor groove platform, major groove intercalation | ||
| IL_6VZ7_141 | Major groove intercalation | ||
| IL_6VZ7_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ7_200 | No text annotation | ||
| IL_6VZ7_143 | UAA/GAN related | ||
| IL_6VZ7_144 | Bulged stacked bases | ||
| IL_6VZ7_145 | No text annotation | ||
| IL_6VZ7_146 | Major groove platform | ||
| IL_6VZ7_147 | No text annotation | ||
| IL_6VZ7_148 | No text annotation | ||
| IL_6VZ7_149 | No text annotation | ||
| IL_6VZ7_150 | Minor groove platform | ||
| IL_6VZ7_151 | Isolated tHS basepair with bulges | ||
| IL_6VZ7_152 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_153 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_154 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_155 | Isolated non-canonical cWW pair | ||
| IL_6VZ7_156 | No text annotation | ||
| IL_6VZ7_201 | No text annotation | ||
| IL_6VZ7_157 | Kink-turn | ||
| IL_6VZ7_158 | Single bulged U | ||
| IL_6VZ7_159 | Double sheared | ||
| IL_6VZ7_160 | No text annotation | ||
| IL_6VZ7_161 | No text annotation | ||
| IL_6VZ7_162 | No text annotation | ||
| IL_6VZ7_163 | Major groove minor groove platform with extra cWW | ||
| IL_6VZ7_164 | Double sheared with non-canonical cWW | ||
| IL_6VZ7_165 | No text annotation | ||
| IL_6VZ7_166 | Isolated non-canonical cWW with bulges | ||
| IL_6VZ7_167 | No text annotation | ||
| IL_6VZ7_168 | Major groove platform with intercalation | ||
| IL_6VZ7_169 | No text annotation | ||
| IL_6VZ7_170 | Single bulged A | ||
| IL_6VZ7_171 | tSH-tHS-tHW | ||
| IL_6VZ7_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6VZ7_173 | C-loop | ||
| IL_6VZ7_174 | UAA/GAN related, with intercalation | ||
| IL_6VZ7_175 | Multiple bulged bases | ||
| IL_6VZ7_176 | UAA/GAN with extra cWW | ||
| IL_6VZ7_177 | No text annotation | ||
| IL_6VZ7_178 | Major groove intercalation | ||
| IL_6VZ7_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6VZ7_180 | tHS double platform | ||
| IL_6VZ7_181 | Major groove intercalation | ||
| IL_6VZ7_182 | No text annotation | ||
| IL_6VZ7_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6VZ7_184 | Symmetric double minor groove platform | ||
| IL_6VZ7_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VZ7_001 | No text annotation | ||
| J3_6VZ7_027 | No text annotation | ||
| J3_6VZ7_002 | No text annotation | ||
| J3_6VZ7_028 | No text annotation | ||
| J3_6VZ7_003 | No text annotation | ||
| J3_6VZ7_004 | No text annotation | ||
| J3_6VZ7_005 | No text annotation | ||
| J3_6VZ7_006 | No text annotation | ||
| J3_6VZ7_029 | No text annotation | ||
| J3_6VZ7_007 | No text annotation | ||
| J3_6VZ7_008 | No text annotation | ||
| J3_6VZ7_030 | No text annotation | ||
| J3_6VZ7_009 | No text annotation | ||
| J3_6VZ7_010 | No text annotation | ||
| J3_6VZ7_011 | No text annotation | ||
| J3_6VZ7_031 | No text annotation | ||
| J3_6VZ7_012 | No text annotation | ||
| J3_6VZ7_013 | No text annotation | ||
| J3_6VZ7_032 | No text annotation | ||
| J3_6VZ7_033 | No text annotation | ||
| J3_6VZ7_014 | No text annotation | ||
| J3_6VZ7_034 | No text annotation | ||
| J3_6VZ7_015 | No text annotation | ||
| J3_6VZ7_016 | No text annotation | ||
| J3_6VZ7_017 | No text annotation | ||
| J3_6VZ7_018 | No text annotation | ||
| J3_6VZ7_019 | No text annotation | ||
| J3_6VZ7_020 | No text annotation | ||
| J3_6VZ7_035 | No text annotation | ||
| J3_6VZ7_021 | Kink-turn 3-way junction | ||
| J3_6VZ7_036 | No text annotation | ||
| J3_6VZ7_022 | No text annotation | ||
| J3_6VZ7_023 | No text annotation | ||
| J3_6VZ7_024 | No text annotation | ||
| J3_6VZ7_025 | No text annotation | ||
| J3_6VZ7_026 | No text annotation | ||
| J4_6VZ7_001 | tRNA junction | ||
| J4_6VZ7_002 | tRNA junction | ||
| J4_6VZ7_003 | No text annotation | ||
| J4_6VZ7_004 | No text annotation | ||
| J4_6VZ7_005 | No text annotation | ||
| J4_6VZ7_006 | No text annotation | ||
| J4_6VZ7_007 | No text annotation | ||
| J4_6VZ7_008 | No text annotation | ||
| J4_6VZ7_009 | No text annotation | ||
| J4_6VZ7_010 | No text annotation | ||
| J4_6VZ7_011 | No text annotation | ||
| J4_6VZ7_012 | No text annotation | ||
| J4_6VZ7_013 | No text annotation | ||
| J4_6VZ7_014 | No text annotation | ||
| J4_6VZ7_015 | No text annotation | ||
| J5_6VZ7_001 | No text annotation | ||
| J5_6VZ7_002 | No text annotation | ||
| J5_6VZ7_003 | No text annotation | ||
| J5_6VZ7_004 | No text annotation | ||
| J5_6VZ7_005 | No text annotation | ||
| J5_6VZ7_006 | No text annotation | ||
| J5_6VZ7_007 | No text annotation | ||
| J6_6VZ7_001 | No text annotation | ||
| J7_6VZ7_001 | No text annotation | ||
| J7_6VZ7_002 | No text annotation |
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