IL_6VZJ_014

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6VZJ|1|D|U|244, 6VZJ|1|D|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0755

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6VZJ|1|D|G|242
6VZJ|1|D|A|243
6VZJ|1|D|U|244
6VZJ|1|D|U|245
6VZJ|1|D|A|246
6VZJ|1|D|G|247
*
6VZJ|1|D|C|277
6VZJ|1|D|G|278
6VZJ|1|D|A|279
6VZJ|1|D|C|280
6VZJ|1|D|G|281
6VZJ|1|D|A|282
6VZJ|1|D|U|283
6VZJ|1|D|C|284

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17