IL_6VZJ_082

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6VZJ|1|a|G|801, 6VZJ|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_082 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0597

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|G|674
6VZJ|1|a|A|675
6VZJ|1|a|A|676
6VZJ|1|a|A|677
6VZJ|1|a|C|678
*
6VZJ|1|a|G|799
6VZJ|1|a|A|800
6VZJ|1|a|G|801
6VZJ|1|a|A|802
6VZJ|1|a|U|803
6VZJ|1|a|A|804
6VZJ|1|a|G|805
6VZJ|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15