IL_6VZJ_095
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZJ_095 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.0734
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6VZJ|1|a|G|864
6VZJ|1|a|C|865
6VZJ|1|a|A|866
6VZJ|1|a|C|867
6VZJ|1|a|U|868
*
6VZJ|1|a|A|909
6VZJ|1|a|A|910
6VZJ|1|a|A|911
6VZJ|1|a|C|912
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain v
- 50S ribosomal protein L16
Coloring options: