IL_6VZJ_106
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZJ_106 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1337
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6VZJ|1|a|G|1038
6VZJ|1|a|A|1039
6VZJ|1|a|A|1040
6VZJ|1|a|G|1041
*
6VZJ|1|a|C|1114
6VZJ|1|a|G|1115
6VZJ|1|a|G|1116
6VZJ|1|a|C|1117
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L25
- Chain p
- 50S ribosomal protein L6
- Chain q
- 50S ribosomal protein L36
- Chain v
- 50S ribosomal protein L16
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