IL_6VZJ_112

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6VZJ|1|a|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_112 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.064

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6VZJ|1|a|C|1208
6VZJ|1|a|U|1209
6VZJ|1|a|G|1210
6VZJ|1|a|C|1211
6VZJ|1|a|G|1212
6VZJ|1|a|A|1213
6VZJ|1|a|A|1214
6VZJ|1|a|G|1215
*
6VZJ|1|a|U|1234
6VZJ|1|a|G|1235
6VZJ|1|a|G|1236
6VZJ|1|a|A|1237
6VZJ|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L20