IL_6VZJ_172
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZJ_172 not in the Motif Atlas
- Homologous match to IL_5J7L_346
- Geometric discrepancy: 0.069
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VZJ|1|a|C|2652
6VZJ|1|a|U|2653
6VZJ|1|a|A|2654
6VZJ|1|a|G|2655
6VZJ|1|a|U|2656
6VZJ|1|a|A|2657
6VZJ|1|a|C|2658
*
6VZJ|1|a|G|2663
6VZJ|1|a|G|2664
6VZJ|1|a|A|2665
6VZJ|1|a|C|2666
6VZJ|1|a|C|2667
6VZJ|1|a|G|2668
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- 50S ribosomal protein L6
- Chain t
- 50S ribosomal protein L14
Coloring options: