IL_6VZJ_185
3D structure
- PDB id
- 6VZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZJ_185 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0557
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VZJ|1|d|C|71
6VZJ|1|d|G|72
6VZJ|1|d|A|73
6VZJ|1|d|U|74
6VZJ|1|d|G|75
6VZJ|1|d|G|76
6VZJ|1|d|U|77
6VZJ|1|d|A|78
6VZJ|1|d|G|79
*
6VZJ|1|d|C|97
6VZJ|1|d|G|98
6VZJ|1|d|A|99
6VZJ|1|d|G|100
6VZJ|1|d|A|101
6VZJ|1|d|G|102
6VZJ|1|d|U|103
6VZJ|1|d|A|104
6VZJ|1|d|G|105
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L25
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L30
- Chain v
- 50S ribosomal protein L16
Coloring options: