IL_6VZJ_196

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAC*GUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_196 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3614

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|U|1411
6VZJ|1|a|U|1412
6VZJ|1|a|A|1413
6VZJ|1|a|C|1414
*
6VZJ|1|a|G|1588
6VZJ|1|a|U|1589
6VZJ|1|a|A|1590

Current chains

Chain a

23S rRNA

Nearby chains