IL_6VZJ_198

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_198 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VZJ|1|a|U|1851
6VZJ|1|a|U|1852
6VZJ|1|a|A|1853
6VZJ|1|a|A|1854
6VZJ|1|a|U|1855
6VZJ|1|a|U|1856
6VZJ|1|a|G|1857
6VZJ|1|a|A|1858
6VZJ|1|a|U|1859
6VZJ|1|a|G|1860
*
6VZJ|1|a|U|1882
6VZJ|1|a|U|1883
6VZJ|1|a|G|1884
6VZJ|1|a|A|1885
6VZJ|1|a|U|1886
6VZJ|1|a|C|1887
6VZJ|1|a|G|1888
6VZJ|1|a|A|1889
6VZJ|1|a|A|1890
6VZJ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA