IL_6W2S_002

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUG*UUUG

Length

7 nucleotides

Bulged bases

6W2S|1|0|U|452

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_002 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1827

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6W2S|1|0|C|371
6W2S|1|0|U|372
6W2S|1|0|G|373
*
6W2S|1|0|U|450
6W2S|1|0|U|451
6W2S|1|0|U|452
6W2S|1|0|G|453

Current chains

Chain 0

CrPV 5'-UTR IRES

Nearby chains

Chain h

RACK1