IL_6W2S_007
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GCGAAAC*GGAGUAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_007 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2034
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6W2S|1|0|G|594
6W2S|1|0|C|595
6W2S|1|0|G|596
6W2S|1|0|A|597
6W2S|1|0|A|598
6W2S|1|0|A|599
6W2S|1|0|C|600
*
6W2S|1|0|G|682
6W2S|1|0|G|683
6W2S|1|0|A|684
6W2S|1|0|G|685
6W2S|1|0|U|686
6W2S|1|0|A|687
6W2S|1|0|A|688
6W2S|1|0|C|689
Current chains
- Chain 0
- CrPV 5'-UTR IRES
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- uS7
- Chain P
- uS11
Coloring options: