IL_6W2S_008
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CGUACG*UAAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6W2S|1|0|U|679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_008 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1553
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6W2S|1|0|C|600
6W2S|1|0|G|601
6W2S|1|0|U|602
6W2S|1|0|A|603
6W2S|1|0|C|604
6W2S|1|0|G|605
*
6W2S|1|0|U|676
6W2S|1|0|A|677
6W2S|1|0|A|678
6W2S|1|0|U|679
6W2S|1|0|A|680
6W2S|1|0|A|681
6W2S|1|0|G|682
Current chains
- Chain 0
- CrPV 5'-UTR IRES
Nearby chains
- Chain G
- uS7
- Chain a
- eS25
Coloring options: