IL_6W2S_023
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6W2S|1|A|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_023 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1357
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6W2S|1|A|G|145
6W2S|1|A|G|146
6W2S|1|A|A|147
6W2S|1|A|U|148
6W2S|1|A|A|149
6W2S|1|A|A|150
6W2S|1|A|C|151
*
6W2S|1|A|G|167
6W2S|1|A|C|168
6W2S|1|A|U|169
6W2S|1|A|A|170
6W2S|1|A|A|171
6W2S|1|A|U|172
6W2S|1|A|A|173
6W2S|1|A|C|174
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- eS6
- Chain Z
- eS24
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