IL_6W2S_077
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6W2S|1|A|G|1285, 6W2S|1|A|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_077 not in the Motif Atlas
- Geometric match to IL_8P9A_470
- Geometric discrepancy: 0.2792
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6W2S|1|A|G|1281
6W2S|1|A|A|1282
6W2S|1|A|C|1283
6W2S|1|A|A|1284
6W2S|1|A|G|1285
6W2S|1|A|G|1286
6W2S|1|A|A|1287
6W2S|1|A|U|1288
6W2S|1|A|U|1289
6W2S|1|A|G|1290
*
6W2S|1|A|C|1309
6W2S|1|A|U|1310
6W2S|1|A|C|1311
6W2S|1|A|G|1312
6W2S|1|A|A|1313
6W2S|1|A|U|1314
6W2S|1|A|U|1315
6W2S|1|A|C|1316
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain L
- eS10
- Chain N
- eS12
- Chain e
- eS29
- Chain g
- eS31
Coloring options: