IL_6W2S_095

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6W2S|1|A|A|1824, 6W2S|1|A|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_095 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3767

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6W2S|1|A|C|1708
6W2S|1|A|G|1709
6W2S|1|A|C|1710
6W2S|1|A|U|1711
*
6W2S|1|A|A|1822
6W2S|1|A|A|1823
6W2S|1|A|A|1824
6W2S|1|A|A|1825
6W2S|1|A|G|1826

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

uS12