IL_6W2S_122
3D structure
- PDB id
- 6W2S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2S_122 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.423
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6W2S|1|A|G|807
6W2S|1|A|A|808
6W2S|1|A|A|809
6W2S|1|A|A|810
6W2S|1|A|A|811
6W2S|1|A|A|812
6W2S|1|A|A|813
6W2S|1|A|U|814
6W2S|1|A|U|815
*
6W2S|1|A|A|849
6W2S|1|A|C|850
6W2S|1|A|C|851
6W2S|1|A|G|852
6W2S|1|A|C|853
6W2S|1|A|A|854
6W2S|1|A|G|855
6W2S|1|A|C|856
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain K
- uS4
- Chain M
- uS17
- Chain X
- uS8
Coloring options: