IL_6W2T_004

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

CUGAG*CAACACG

Length

12 nucleotides

Bulged bases

6W2T|1|A|C|442, 6W2T|1|A|C|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|A|C|378
6W2T|1|A|U|379
6W2T|1|A|G|380
6W2T|1|A|A|381
6W2T|1|A|G|382
*
6W2T|1|A|C|439
6W2T|1|A|A|440
6W2T|1|A|A|441
6W2T|1|A|C|442
6W2T|1|A|A|443
6W2T|1|A|C|444
6W2T|1|A|G|445

Current chains

Chain A

CrPV 5'-UTR IRES

Nearby chains

Chain V

uS10

Chain h

RACK1