IL_6W2T_023

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_023 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.175

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6W2T|1|a|C|188
6W2T|1|a|U|189
6W2T|1|a|G|190
6W2T|1|a|A|191
6W2T|1|a|C|192
*
6W2T|1|a|G|207
6W2T|1|a|G|208
6W2T|1|a|A|209
6W2T|1|a|U|210
6W2T|1|a|G|211

Current chains

Chain a

18S rRNA

Nearby chains

Chain J

eS8