IL_6W2T_053

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|a|G|807
6W2T|1|a|A|808
6W2T|1|a|A|809
6W2T|1|a|A|810
6W2T|1|a|A|811
6W2T|1|a|A|812
6W2T|1|a|A|813
6W2T|1|a|U|814
6W2T|1|a|U|815
6W2T|1|a|A|816
*
6W2T|1|a|U|848
6W2T|1|a|A|849
6W2T|1|a|C|850
6W2T|1|a|C|851
6W2T|1|a|G|852
6W2T|1|a|C|853
6W2T|1|a|A|854
6W2T|1|a|G|855
6W2T|1|a|C|856

Current chains

Chain a

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain M

uS17

Chain X

uS8