IL_6W2T_073

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

6W2T|1|a|A|1522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_073 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.2794

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6W2T|1|a|G|1235
6W2T|1|a|G|1236
*
6W2T|1|a|C|1521
6W2T|1|a|A|1522
6W2T|1|a|C|1523

Current chains

Chain a

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13