IL_6W2T_074

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_074 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.1514

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6W2T|1|a|G|1270
6W2T|1|a|C|1271
6W2T|1|a|C|1272
*
6W2T|1|a|G|1510
6W2T|1|a|U|1511
6W2T|1|a|C|1512

Current chains

Chain a

18S rRNA

Nearby chains

Chain L

eS10

Chain Q

uS19

Chain e

eS29

Chain g

eS31