IL_6W2T_096

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

CGAUUG*UAGAG

Length

11 nucleotides

Bulged bases

6W2T|1|a|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W2T|1|a|C|1717
6W2T|1|a|G|1718
6W2T|1|a|A|1719
6W2T|1|a|U|1720
6W2T|1|a|U|1721
6W2T|1|a|G|1722
*
6W2T|1|a|U|1812
6W2T|1|a|A|1813
6W2T|1|a|G|1814
6W2T|1|a|A|1815
6W2T|1|a|G|1816

Current chains

Chain a

18S rRNA

Nearby chains

Chain Y

uS12