Loop IL_6W2T

3D structure

PDB id: 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.36 Å

Loop

Sequence: GAUUACGAC*GGUCGGACAGCACAUGUUAGUCAUGUAUUAUGGUGUUUC
Length: 48 nucleotides
Bulged bases: 6W2T|1|A|U|387, 6W2T|1|A|U|422, 6W2T|1|A|G|423, 6W2T|1|A|U|424, 6W2T|1|A|A|425, 6W2T|1|A|U|426, 6W2T|1|A|U|429
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6W2T|1|A|G|384
6W2T|1|A|A|385
6W2T|1|A|U|386
6W2T|1|A|U|387
6W2T|1|A|A|388
6W2T|1|A|C|389
6W2T|1|A|G|390
6W2T|1|A|A|391
6W2T|1|A|C|392
*
6W2T|1|A|G|399
6W2T|1|A|G|400
6W2T|1|A|U|401
6W2T|1|A|C|402
6W2T|1|A|G|403
6W2T|1|A|G|404
6W2T|1|A|A|405
6W2T|1|A|C|406
6W2T|1|A|A|407
6W2T|1|A|G|408
6W2T|1|A|C|409
6W2T|1|A|A|410
6W2T|1|A|C|411
6W2T|1|A|A|412
6W2T|1|A|U|413
6W2T|1|A|G|414
6W2T|1|A|U|415
6W2T|1|A|U|416
6W2T|1|A|A|417
6W2T|1|A|G|418
6W2T|1|A|U|419
6W2T|1|A|C|420
6W2T|1|A|A|421
6W2T|1|A|U|422
6W2T|1|A|G|423
6W2T|1|A|U|424
6W2T|1|A|A|425
6W2T|1|A|U|426
6W2T|1|A|U|427
6W2T|1|A|A|428
6W2T|1|A|U|429
6W2T|1|A|G|430
6W2T|1|A|G|431
6W2T|1|A|U|432
6W2T|1|A|G|433
6W2T|1|A|U|434
6W2T|1|A|U|435
6W2T|1|A|U|436
6W2T|1|A|C|437

Current chains

Chain A: CrPV 5'-UTR IRES

Nearby chains

Chain E: uS3
Chain V: uS10

IL_6W2T_104