IL_6W2T_105
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- CAAAGGAGAAGGUGAUUUUAAUUGCACCUGAAGC*GUCUUCCCUUUG
- Length
- 46 nucleotides
- Bulged bases
- 6W2T|1|A|A|620, 6W2T|1|A|U|626, 6W2T|1|A|G|627, 6W2T|1|A|A|628, 6W2T|1|A|U|657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6W2T|1|A|C|614
6W2T|1|A|A|615
6W2T|1|A|A|616
6W2T|1|A|A|617
6W2T|1|A|G|618
6W2T|1|A|G|619
6W2T|1|A|A|620
6W2T|1|A|G|621
6W2T|1|A|A|622
6W2T|1|A|A|623
6W2T|1|A|G|624
6W2T|1|A|G|625
6W2T|1|A|U|626
6W2T|1|A|G|627
6W2T|1|A|A|628
6W2T|1|A|U|629
6W2T|1|A|U|630
6W2T|1|A|U|631
6W2T|1|A|U|632
6W2T|1|A|A|633
6W2T|1|A|A|634
6W2T|1|A|U|635
6W2T|1|A|U|636
6W2T|1|A|G|637
6W2T|1|A|C|638
6W2T|1|A|A|639
6W2T|1|A|C|640
6W2T|1|A|C|641
6W2T|1|A|U|642
6W2T|1|A|G|643
6W2T|1|A|A|644
6W2T|1|A|A|645
6W2T|1|A|G|646
6W2T|1|A|C|647
*
6W2T|1|A|G|656
6W2T|1|A|U|657
6W2T|1|A|C|658
6W2T|1|A|U|659
6W2T|1|A|U|660
6W2T|1|A|C|661
6W2T|1|A|C|662
6W2T|1|A|C|663
6W2T|1|A|U|664
6W2T|1|A|U|665
6W2T|1|A|U|666
6W2T|1|A|G|667
Current chains
- Chain A
- CrPV 5'-UTR IRES
Nearby chains
- Chain i
- eS25
Coloring options: