3D structure

PDB id
6W2T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.36 Å

Loop

Sequence
CAAAGGAGAAGGUGAUUUUAAUUGCACCUGAAGC*GUCUUCCCUUUG
Length
46 nucleotides
Bulged bases
6W2T|1|A|A|620, 6W2T|1|A|U|626, 6W2T|1|A|G|627, 6W2T|1|A|A|628, 6W2T|1|A|U|657
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6W2T|1|A|C|614
6W2T|1|A|A|615
6W2T|1|A|A|616
6W2T|1|A|A|617
6W2T|1|A|G|618
6W2T|1|A|G|619
6W2T|1|A|A|620
6W2T|1|A|G|621
6W2T|1|A|A|622
6W2T|1|A|A|623
6W2T|1|A|G|624
6W2T|1|A|G|625
6W2T|1|A|U|626
6W2T|1|A|G|627
6W2T|1|A|A|628
6W2T|1|A|U|629
6W2T|1|A|U|630
6W2T|1|A|U|631
6W2T|1|A|U|632
6W2T|1|A|A|633
6W2T|1|A|A|634
6W2T|1|A|U|635
6W2T|1|A|U|636
6W2T|1|A|G|637
6W2T|1|A|C|638
6W2T|1|A|A|639
6W2T|1|A|C|640
6W2T|1|A|C|641
6W2T|1|A|U|642
6W2T|1|A|G|643
6W2T|1|A|A|644
6W2T|1|A|A|645
6W2T|1|A|G|646
6W2T|1|A|C|647
*
6W2T|1|A|G|656
6W2T|1|A|U|657
6W2T|1|A|C|658
6W2T|1|A|U|659
6W2T|1|A|U|660
6W2T|1|A|C|661
6W2T|1|A|C|662
6W2T|1|A|C|663
6W2T|1|A|U|664
6W2T|1|A|U|665
6W2T|1|A|U|666
6W2T|1|A|G|667

Current chains

Chain A
CrPV 5'-UTR IRES

Nearby chains

Chain i
eS25

Coloring options:

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