IL_6W6K_025

3D structure

PDB id

6W6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Activated-high-Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6K_025 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2257

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6W6K|1|A|G|450
6W6K|1|A|A|451
6W6K|1|A|A|452
6W6K|1|A|G|453
6W6K|1|A|G|454
6W6K|1|A|G|455
*
6W6K|1|A|C|477
6W6K|1|A|A|478
6W6K|1|A|U|479
6W6K|1|A|U|480
6W6K|1|A|G|481
6W6K|1|A|A|482
6W6K|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16