3D structure

PDB id
6W6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Activated-high-Mg2+
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W6K_039 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.1438
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6W6K|1|A|G|887
6W6K|1|A|G|888
6W6K|1|A|A|889
6W6K|1|A|G|890
6W6K|1|A|U|891
6W6K|1|A|A|892
6W6K|1|A|C|893
6W6K|1|A|G|894
*
6W6K|1|A|U|905
6W6K|1|A|A|906
6W6K|1|A|A|907
6W6K|1|A|A|908
6W6K|1|A|A|909
6W6K|1|A|C|910

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12

Coloring options:


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