IL_6W6K_042

3D structure

PDB id

6W6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Activated-high-Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6W6K|1|A|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6K_042 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.3381

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6W6K|1|A|G|933
6W6K|1|A|C|934
6W6K|1|A|A|935
*
6W6K|1|A|U|1380
6W6K|1|A|U|1381
6W6K|1|A|C|1382
6W6K|1|A|C|1383
6W6K|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains