IL_6W6L_040

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGCCCG*CC

Length

8 nucleotides

Bulged bases

6W6L|1|t|C|495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_040 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.2569

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6W6L|1|t|G|493
6W6L|1|t|G|494
6W6L|1|t|C|495
6W6L|1|t|C|496
6W6L|1|t|C|497
6W6L|1|t|G|498
*
6W6L|1|t|C|648
6W6L|1|t|C|649

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4