IL_6W6L_058

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CCGAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_058 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.2529

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6W6L|1|t|C|1413
6W6L|1|t|C|1414
6W6L|1|t|G|1415
6W6L|1|t|A|1416
6W6L|1|t|G|1417
*
6W6L|1|t|C|1432
6W6L|1|t|C|1433
6W6L|1|t|G|1434
6W6L|1|t|A|1435
6W6L|1|t|G|1436

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L18