IL_6W6L_105

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6W6L|1|t|U|2666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_105 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2097

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6W6L|1|t|C|2625
6W6L|1|t|A|2626
6W6L|1|t|G|2627
*
6W6L|1|t|C|2664
6W6L|1|t|G|2665
6W6L|1|t|U|2666
6W6L|1|t|G|2667

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L34