IL_6W6L_108

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6W6L|1|t|G|2690

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_108 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.2498

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

6W6L|1|t|C|2683
6W6L|1|t|G|2684
*
6W6L|1|t|C|2689
6W6L|1|t|G|2690
6W6L|1|t|G|2691

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain V

60S ribosomal protein L22

Chain Y

60S ribosomal protein L23a