IL_6W6L_165
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- GCCCC*GCGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W6L_165 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3504
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6W6L|1|t|G|127
6W6L|1|t|C|128
6W6L|1|t|C|129
6W6L|1|t|C|130
6W6L|1|t|C|131
*
6W6L|1|t|G|137
6W6L|1|t|C|138
6W6L|1|t|G|139
6W6L|1|t|C|140
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L7a
- Chain O
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L23a
- Chain i
- 60S ribosomal protein L35
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