IL_6W6L_180

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGCCUCGGAUAGCCGGUC*GGGUCCGGUGCGGAGUGCC

Length

37 nucleotides

Bulged bases

6W6L|1|t|C|4718, 6W6L|1|t|C|4719, 6W6L|1|t|U|4725, 6W6L|1|t|U|4827, 6W6L|1|t|G|4828, 6W6L|1|t|G|4830, 6W6L|1|t|G|4833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6W6L|1|t|G|4716
6W6L|1|t|G|4717
6W6L|1|t|C|4718
6W6L|1|t|C|4719
6W6L|1|t|U|4720
6W6L|1|t|C|4721
6W6L|1|t|G|4722
6W6L|1|t|G|4723
6W6L|1|t|A|4724
6W6L|1|t|U|4725
6W6L|1|t|A|4726
6W6L|1|t|G|4727
6W6L|1|t|C|4728
6W6L|1|t|C|4729
6W6L|1|t|G|4730
6W6L|1|t|G|4731
6W6L|1|t|U|4732
6W6L|1|t|C|4733
*
6W6L|1|t|G|4819
6W6L|1|t|G|4820
6W6L|1|t|G|4821
6W6L|1|t|U|4822
6W6L|1|t|C|4823
6W6L|1|t|C|4824
6W6L|1|t|G|4825
6W6L|1|t|G|4826
6W6L|1|t|U|4827
6W6L|1|t|G|4828
6W6L|1|t|C|4829
6W6L|1|t|G|4830
6W6L|1|t|G|4831
6W6L|1|t|A|4832
6W6L|1|t|G|4833
6W6L|1|t|U|4834
6W6L|1|t|G|4835
6W6L|1|t|C|4836
6W6L|1|t|C|4837

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L6

Chain J

60S ribosomal protein L9

Chain N

60S ribosomal protein L14

Chain P

60S ribosomal protein L13a

Chain T

60S ribosomal protein L18a

Chain g

60S ribosomal protein L35a