IL_6W6P_067

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_067 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.1718

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6W6P|1|A|U|1865
6W6P|1|A|U|1866
6W6P|1|A|A|1867
6W6P|1|A|A|1868
6W6P|1|A|G|1869
*
6W6P|1|A|U|1901
6W6P|1|A|G|1902
6W6P|1|A|A|1903
6W6P|1|A|A|1904
6W6P|1|A|G|1905

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2