IL_6W6P_081

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6W6P|1|A|U|2416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_081 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.2134

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6W6P|1|A|U|2415
6W6P|1|A|U|2416
6W6P|1|A|C|2417
*
6W6P|1|A|G|2428
6W6P|1|A|G|2429

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L33

Chain M

50S ribosomal protein L15