IL_6W6P_085

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_085 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1025

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6W6P|1|A|C|2480
6W6P|1|A|C|2481
6W6P|1|A|A|2482
6W6P|1|A|A|2483
6W6P|1|A|G|2484
*
6W6P|1|A|C|2494
6W6P|1|A|G|2495
6W6P|1|A|A|2496
6W6P|1|A|C|2497
6W6P|1|A|G|2498

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain N

50S ribosomal protein L16