IL_6W6P_122

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAG*CGGUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_122 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1548

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6W6P|1|a|A|461
6W6P|1|a|G|462
6W6P|1|a|A|463
6W6P|1|a|A|464
6W6P|1|a|G|465
*
6W6P|1|a|C|498
6W6P|1|a|G|499
6W6P|1|a|G|500
6W6P|1|a|U|501
6W6P|1|a|A|502
6W6P|1|a|U|503

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16