IL_6W77_067

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAACA*UGGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W77_067 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2667

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6W77|1|A|C|779
6W77|1|A|A|780
6W77|1|A|A|781
6W77|1|A|A|782
6W77|1|A|C|783
6W77|1|A|A|784
*
6W77|1|A|U|798
6W77|1|A|G|799
6W77|1|A|G|800
6W77|1|A|U|801
6W77|1|A|A|802
6W77|1|A|G|803

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain K

30S ribosomal protein S11