6W77 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6W77_001 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
HL_6W77_002 | 1/A/80:89 | No text annotation | ||
HL_6W77_003 | 1/A/158:163 | GNRA | homologous HL_5J7L_003 NA | |
HL_6W77_004 | 1/A/186:191 | GNRA | homologous HL_5J7L_004 NA | |
HL_6W77_006 | 1/A/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
HL_6W77_007 | 1/A/296:301 | GNRA | homologous HL_5J7L_007 NA | |
HL_6W77_008 | 1/A/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
HL_6W77_009 | 1/A/342:347 | UNCG | homologous HL_5J7L_009 NA | |
HL_6W77_010 | 1/A/379:384 | GNRA | homologous HL_5J7L_010 NA | |
HL_6W77_011 | 1/A/419:424 | UNCG | homologous HL_5J7L_011 NA | |
HL_6W77_012 | 1/A/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
HL_6W77_013 | 1/A/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
HL_6W77_014 | 1/A/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
HL_6W77_015 | 1/A/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
HL_6W77_016 | 1/A/726:731 | GNRA | homologous HL_5J7L_016 NA | |
HL_6W77_017 | 1/A/786:796 | No text annotation | ||
HL_6W77_019 | 1/A/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
HL_6W77_020 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
HL_6W77_021 | 1/A/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
HL_6W77_024 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
HL_6W77_025 | 1/A/1089:1097 | GNRA with extra cWW | geometric HL_4WF9_039 HL_45359.1 | |
HL_6W77_030 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
HL_6W77_031 | 1/A/1449:1454 | UNCG | homologous HL_4LFB_031 HL_61337.1 | |
HL_6W77_032 | 1/A/1513:1522 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6W77_005 | No text annotation | ||
HL_6W77_018 | Externally structured | ||
HL_6W77_022 | GNRA | ||
HL_6W77_023 | UNCG | ||
HL_6W77_033 | No text annotation | ||
HL_6W77_026 | No text annotation | ||
HL_6W77_034 | No text annotation | ||
HL_6W77_027 | GNRA | ||
HL_6W77_028 | GNRA | ||
HL_6W77_029 | T-loop with 3 stacked bulged bases |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6W77_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
IL_6W77_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
IL_6W77_003 | 1/A/47:52, 1/A/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
IL_6W77_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
IL_6W77_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
IL_6W77_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
IL_6W77_007 | 1/A/70:73, 1/A/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
IL_6W77_060 | 1/A/75:76, 1/A/93:95 | Single bulged G | homologous IL_5J7L_395 NA | |
IL_6W77_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
IL_6W77_010 | 1/A/132:136, 1/A/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
IL_6W77_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
IL_6W77_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
IL_6W77_013 | 1/A/203:206, 1/A/213:214 | Minor groove platform | geometric IL_3MXH_005 IL_87975.1 | |
IL_6W77_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
IL_6W77_061 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
IL_6W77_016 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
IL_6W77_017 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
IL_6W77_018 | 1/A/371:375, 1/A/389:390 | C-loop | geometric IL_5J7L_018 NA | |
IL_6W77_019 | 1/A/375:376, 1/A/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
IL_6W77_020 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
IL_6W77_021 | 1/A/440:442, 1/A/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
IL_6W77_022 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
IL_6W77_023 | 1/A/450:455, 1/A/477:483 | No text annotation | geometric IL_5J7L_023 NA | |
IL_6W77_024 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
IL_6W77_025 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
IL_6W77_026 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
IL_6W77_027 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
IL_6W77_028 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
IL_6W77_029 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
IL_6W77_030 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
IL_6W77_031 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
IL_6W77_032 | 1/A/658:659, 1/A/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
IL_6W77_033 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
IL_6W77_062 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
IL_6W77_036 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_5J7L_036 NA | |
IL_6W77_037 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
IL_6W77_067 | 1/A/779:784, 1/A/798:803 | tSH-tHW-tHS-cWW | geometric IL_3LQX_002 IL_35186.1 | |
IL_6W77_038 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
IL_6W77_047 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
IL_6W77_051 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
IL_6W77_052 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
IL_6W77_057 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
IL_6W77_058 | 1/A/1440:1442, 1/A/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
IL_6W77_059 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6W77_008 | Single bulged G, near cWW | ||
IL_6W77_015 | No text annotation | ||
IL_6W77_034 | No text annotation | ||
IL_6W77_035 | Kink-turn | ||
IL_6W77_063 | No text annotation | ||
IL_6W77_039 | Minor groove platform | ||
IL_6W77_040 | No text annotation | ||
IL_6W77_041 | Minor groove platform | ||
IL_6W77_042 | Single stack bend | ||
IL_6W77_043 | Single bulged U | ||
IL_6W77_044 | No text annotation | ||
IL_6W77_064 | No text annotation | ||
IL_6W77_045 | Minor groove platform | ||
IL_6W77_046 | Single bulged U | ||
IL_6W77_048 | No text annotation | ||
IL_6W77_049 | Minor groove platform | ||
IL_6W77_065 | Single stack bend | ||
IL_6W77_050 | No text annotation | ||
IL_6W77_053 | Double sheared with non-canonical cWW | ||
IL_6W77_054 | No text annotation | ||
IL_6W77_055 | No text annotation | ||
IL_6W77_056 | Double sheared | ||
IL_6W77_066 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6W77_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
J3_6W77_013 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
J3_6W77_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
J3_6W77_014 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
J3_6W77_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
J3_6W77_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
J3_6W77_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
J3_6W77_009 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
J3_6W77_010 | 1/A/1073:1074, 1/A/1083:1088, 1/A/1098:1102 | No text annotation | ||
J4_6W77_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
J4_6W77_002 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
J4_6W77_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
J5_6W77_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
J5_6W77_002 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
J5_6W77_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6W77_015 | No text annotation | ||
J3_6W77_019 | No text annotation | ||
J3_6W77_005 | No text annotation | ||
J3_6W77_007 | No text annotation | ||
J3_6W77_016 | No text annotation | ||
J3_6W77_008 | No text annotation | ||
J3_6W77_017 | No text annotation | ||
J3_6W77_011 | No text annotation | ||
J3_6W77_018 | No text annotation | ||
J3_6W77_012 | No text annotation |
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