3D structure

PDB id
6W7M (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Inactive-high-Mg2+ + carbon layer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W7M_023 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.2798
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6W7M|1|A|G|450
6W7M|1|A|A|451
6W7M|1|A|A|452
6W7M|1|A|G|453
6W7M|1|A|G|454
6W7M|1|A|G|455
*
6W7M|1|A|C|477
6W7M|1|A|A|478
6W7M|1|A|U|479
6W7M|1|A|U|480
6W7M|1|A|G|481
6W7M|1|A|A|482
6W7M|1|A|C|483

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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