IL_6W7M_034

3D structure

PDB id

6W7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-high-Mg2+ + carbon layer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7M_034 not in the Motif Atlas

Homologous match to IL_4LFB_030

Geometric discrepancy: 0.2862

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6W7M|1|A|A|673
6W7M|1|A|G|674
6W7M|1|A|A|675
6W7M|1|A|A|676
6W7M|1|A|U|677
6W7M|1|A|U|678
*
6W7M|1|A|A|712
6W7M|1|A|G|713
6W7M|1|A|G|714
6W7M|1|A|A|715
6W7M|1|A|A|716
6W7M|1|A|U|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18