IL_6W7N_021

3D structure

PDB id

6W7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

6W7N|1|A|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7N_021 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1805

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6W7N|1|A|U|409
6W7N|1|A|G|410
6W7N|1|A|A|411
6W7N|1|A|A|412
6W7N|1|A|G|413
6W7N|1|A|A|414
6W7N|1|A|A|415
6W7N|1|A|G|416
*
6W7N|1|A|U|427
6W7N|1|A|G|428
6W7N|1|A|U|429
6W7N|1|A|A|430
6W7N|1|A|A|431
6W7N|1|A|A|432
6W7N|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4