Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6W7N_0011/A/12:22No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_6W7N_0031/A/158:163GNRA
homologous
HL_4LFB_003
HL_34789.2
HL_6W7N_0041/A/186:191GNRA
homologous
HL_5J7L_004
NA
HL_6W7N_0051/A/207:212UNCG
homologous
HL_5J7L_005
NA
HL_6W7N_0061/A/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_6W7N_0071/A/296:301GNRA
homologous
HL_5J7L_007
NA
HL_6W7N_0081/A/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_6W7N_0091/A/342:347UNCG
homologous
HL_6CZR_080
NA
HL_6W7N_0101/A/379:384GNRA
homologous
HL_5J7L_010
NA
HL_6W7N_0111/A/419:425No text annotation
HL_6W7N_0121/A/462:470No text annotation
HL_6W7N_0131/A/522:527No text annotation
geometric
HL_5J7L_143
NA
HL_6W7N_0141/A/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_86621.1
HL_6W7N_0151/A/726:731GNRA
homologous
HL_4LFB_016
HL_34789.2
HL_6W7N_0181/A/862:867GNRA
homologous
HL_4LFB_019
HL_34789.2
HL_6W7N_0191/A/897:902GNRA
homologous
HL_4LFB_020
HL_34789.2
HL_6W7N_0231/A/1076:1081GNRA
homologous
HL_4LFB_024
HL_34789.2
HL_6W7N_0241/A/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.2
HL_6W7N_0291/A/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1

Problematic loops

#loop idProblemSequence
HL_6W7N_002No text annotation
HL_6W7N_031GNRA with extra near cWW
HL_6W7N_032tRNA anticodon loop
HL_6W7N_033tRNA D-loop
HL_6W7N_034No text annotation
HL_6W7N_016No text annotation
HL_6W7N_017No text annotation
HL_6W7N_020No text annotation
HL_6W7N_021GNRA
HL_6W7N_022UNCG
HL_6W7N_025No text annotation
HL_6W7N_035No text annotation
HL_6W7N_026GNRA
HL_6W7N_027GNRA
HL_6W7N_028T-loop with 3 stacked bulged bases
HL_6W7N_030GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6W7N_0011/A/30:32,
1/A/552:553
Single bulged G
homologous
IL_6CZR_113
NA
IL_6W7N_0021/A/44:45,
1/A/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_6W7N_0031/A/47:52,
1/A/359:361
No text annotation
geometric
IL_5J7L_003
NA
IL_6W7N_0041/A/54:56,
1/A/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.2
IL_6W7N_0051/A/63:66,
1/A/103:104
Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_6W7N_0061/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
NA
IL_6W7N_0071/A/70:73,
1/A/97:98
Minor groove platform
homologous
IL_5J7L_007
NA
IL_6W7N_0081/A/75:76,
1/A/93:95
Major groove intercalation
geometric
IL_5J7L_352
NA
IL_6W7N_0091/A/128:131,
1/A/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6W7N_0101/A/132:136,
1/A/227:230
No text annotation
homologous
IL_4LFB_008
IL_60988.2
IL_6W7N_0111/A/144:146,
1/A/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_6W7N_0121/A/147:153,
1/A/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_6W7N_0141/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_6W7N_0681/A/249:252,
1/A/274:275
No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_6W7N_0161/A/292:293,
1/A/304:308
C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_6W7N_0171/A/339:340,
1/A/349:351
Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_6W7N_0181/A/367:369,
1/A/392:393
Single bulged U
geometric
IL_5J7L_017
NA
IL_6W7N_0191/A/371:375,
1/A/389:390
C-loop
homologous
IL_5J7L_018
NA
IL_6W7N_0201/A/375:376,
1/A/387:389
Single bulged G
geometric
IL_5J7L_019
NA
IL_6W7N_0211/A/409:416,
1/A/427:433
No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_6W7N_0221/A/417:419,
1/A/425:426
Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_6W7N_0231/A/440:442,
1/A/492:497
No text annotation
homologous
IL_5J7L_021
NA
IL_6W7N_0241/A/446:450,
1/A/483:488
tSH-tHW-tWW
geometric
IL_5J7L_022
NA
IL_6W7N_0251/A/450:455,
1/A/477:483
No text annotation
homologous
IL_5J7L_023
NA
IL_6W7N_0261/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6W7N_0271/A/515:521,
1/A/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_6W7N_0281/A/580:584,
1/A/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6W7N_0621/A/589:591,
1/A/649:650
Single stack bend
geometric
IL_5J7L_391
NA
IL_6W7N_0631/A/591:592,
1/A/647:649
Single stack bend
geometric
IL_5J7L_032
NA
IL_6W7N_0291/A/594:596,
1/A/644:645
Major groove platform
homologous
IL_4LFB_024
IL_48076.8
IL_6W7N_0301/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.2
IL_6W7N_0311/A/605:612,
1/A/628:633
No text annotation
homologous
IL_5J7L_030
NA
IL_6W7N_0321/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.2
IL_6W7N_0641/A/658:660,
1/A/745:748
No text annotation
geometric
IL_4P3T_002
NA
IL_6W7N_0331/A/659:660,
1/A/745:747
Single stack bend
homologous
IL_5J7L_032
NA
IL_6W7N_0341/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6W7N_0651/A/673:677,
1/A/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.2
IL_6W7N_0361/A/774:778,
1/A/804:805
Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_6W7N_0371/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_6W7N_0461/A/1057:1058,
1/A/1199:1203
Minor groove platform
homologous
IL_5J7L_048
NA
IL_6W7N_0471/A/1060:1061,
1/A/1195:1197
Single bulged A
geometric
IL_5J7L_049
NA
IL_6W7N_0481/A/1061:1063,
1/A/1193:1195
Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA

Problematic loops

#loop idProblemSequence
IL_6W7N_056No text annotation
IL_6W7N_057Tandem non-canonical cWW pairs
IL_6W7N_013Minor groove platform
IL_6W7N_015No text annotation
IL_6W7N_058No text annotation
IL_6W7N_059Isolated non-canonical cWW pair
IL_6W7N_060No text annotation
IL_6W7N_061No text annotation
IL_6W7N_035No text annotation
IL_6W7N_066No text annotation
IL_6W7N_038Isolated non-canonical cWW with bulges
IL_6W7N_039Single bulged G
IL_6W7N_067Isolated non-canonical cWW pair
IL_6W7N_040Minor groove platform
IL_6W7N_041Minor groove platform
IL_6W7N_042Minor groove platform
IL_6W7N_043Single stack bend
IL_6W7N_044Single bulged U
IL_6W7N_045Isolated cWS basepair
IL_6W7N_049No text annotation
IL_6W7N_050Minor groove platform
IL_6W7N_051No text annotation
IL_6W7N_052No text annotation
IL_6W7N_053No text annotation
IL_6W7N_054Double sheared with non-canonical cWW
IL_6W7N_055No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6W7N_0011/A/46:47,
1/A/361:367,
1/A/393:395
No text annotation
homologous
J3_5J7L_001
NA
J3_6W7N_0141/A/46:52,
1/A/359:367,
1/A/393:395
No text annotation
homologous
J3_5J7L_050
NA
J3_6W7N_0021/A/586:588,
1/A/651:654,
1/A/754:755
No text annotation
homologous
J3_5J7L_002
NA
J3_6W7N_0151/A/586:588,
1/A/651:655,
1/A/751:755
No text annotation
homologous
J3_5J7L_051
NA
J3_6W7N_0211/A/672:673,
1/A/717:725,
1/A/732:734
No text annotation
homologous
J3_4LFB_012
J3_74074.1
J3_6W7N_0041/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
homologous
J3_5J7L_004
NA
J3_6W7N_0071/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_88451.1
J3_6W7N_0101/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_6W7N_0191/A/1073:1074,
1/A/1083:1086,
1/A/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_6W7N_0121/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_6W7N_0201/A/1116:1118,
1/A/1155:1161,
1/A/1175:1184
No text annotation
homologous
J3_5J7L_054
NA
J4_6W7N_0011/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312
No text annotation
homologous
J4_6CZR_027
NA
J4_6W7N_0021/A/142:144,
1/A/178:184,
1/A/193:198,
1/A/219:221
No text annotation
homologous
J4_5J7L_002
NA
J5_6W7N_0011/A/36:39,
1/A/403:406,
1/A/436:442,
1/A/492:500,
1/A/545:548
No text annotation
homologous
J5_5J7L_002
NA
J5_6W7N_0021/A/58:61,
1/A/106:113,
1/A/314:317,
1/A/336:340,
1/A/349:354
No text annotation

Problematic loops

#loop idProblemSequence
J3_6W7N_016No text annotation
J3_6W7N_003No text annotation
J3_6W7N_017No text annotation
J3_6W7N_005No text annotation
J3_6W7N_006No text annotation
J3_6W7N_008No text annotation
J3_6W7N_018No text annotation
J3_6W7N_009No text annotation
J3_6W7N_011No text annotation
J3_6W7N_013No text annotation

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