IL_6W7N_024

3D structure

PDB id

6W7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases (A, C, G, U)

485U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7N_024 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.104

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6W7N|1|A|G|446
6W7N|1|A|G|447
6W7N|1|A|A|448
6W7N|1|A|G|449
6W7N|1|A|G|450
*
6W7N|1|A|C|483
6W7N|1|A|G|484
6W7N|1|A|U|485
6W7N|1|A|U|486
6W7N|1|A|A|487
6W7N|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16