IL_6W7N_054

3D structure

PDB id

6W7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7N_054 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1756

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6W7N|1|A|C|1259
6W7N|1|A|G|1260
6W7N|1|A|A|1261
6W7N|1|A|C|1262
6W7N|1|A|C|1263
*
6W7N|1|A|G|1272
6W7N|1|A|C|1273
6W7N|1|A|A|1274
6W7N|1|A|A|1275
6W7N|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14