IL_6W7N_055

3D structure

PDB id

6W7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7N_055 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2271

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6W7N|1|A|C|1303
6W7N|1|A|G|1304
6W7N|1|A|G|1305
6W7N|1|A|A|1306
6W7N|1|A|U|1307
6W7N|1|A|U|1308
*
6W7N|1|A|A|1329
6W7N|1|A|U|1330
6W7N|1|A|G|1331
6W7N|1|A|A|1332
6W7N|1|A|A|1333
6W7N|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13