3D structure

PDB id
6W7W (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Inactive-low-Mg2+ Class B
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGCC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6W7W_010 not in the Motif Atlas
Homologous match to IL_4LFB_008
Geometric discrepancy: 0.1524
The information below is about IL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

6W7W|1|2|C|132
6W7W|1|2|U|133
6W7W|1|2|G|134
6W7W|1|2|C|135
6W7W|1|2|C|136
*
6W7W|1|2|G|227
6W7W|1|2|A|228
6W7W|1|2|U|229
6W7W|1|2|G|230

Current chains

Chain 2
16S rRNA

Nearby chains

Chain O
30S ribosomal protein S16
Chain S
30S ribosomal protein S20

Coloring options:


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