IL_6WD0_102

3D structure

PDB id

6WD0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases (A, C, G, U)

2765A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD0_102 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0792

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.6

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6WD0|1|1|G|2737
6WD0|1|1|A|2738
6WD0|1|1|U|2739
6WD0|1|1|A|2740
6WD0|1|1|A|2741
6WD0|1|1|G|2742
*
6WD0|1|1|C|2762
6WD0|1|1|G|2763
6WD0|1|1|A|2764
6WD0|1|1|A|2765
6WD0|1|1|A|2766
6WD0|1|1|C|2767

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13