IL_6WD1_016

3D structure

PDB id

6WD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6WD1|1|1|G|801, 6WD1|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD1_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WD1|1|1|G|674
6WD1|1|1|A|675
6WD1|1|1|A|676
6WD1|1|1|A|677
6WD1|1|1|C|678
*
6WD1|1|1|G|799
6WD1|1|1|A|800
6WD1|1|1|G|801
6WD1|1|1|A|802
6WD1|1|1|U|803
6WD1|1|1|A|804
6WD1|1|1|G|805
6WD1|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15